Assignment 1 part 1 (Initial commit)

excercise2/2a.txt

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+9
+3

excercise2/gengenome.sh

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+#!/bin/bash
+
+letters=("A" "C" "G" "T")
+
+num_lines=500
+num_char=100
+
+for i in {0..500}
+do
+	line=""
+	for i in {0..100}
+	do 
+	choice=$((RANDOM % 4))
+	line+=${letters[choice]}
+	done
+	mkdir -p out/
+	echo $line >> out/genome.txt
+
+done

excercise2/genome.sh

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+#!/bin/bash
+
+if [ [ -z $1 ]  -o  [ -z $2 ] ]
+	then 
+		echo 'please provide arguments'
+		exit
+fi
+
+
+RESULT=`cat  $1 | grep -c  $2`
+echo $2 appeared $RESULT times in $1
+
+
+

excercise2/parsegenome.c

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+#include <stdio.h>
+#include <string.h>
+
+
+int main ( int argc, char** args ){
+	if( argc != 2){
+		printf("Program use: ./a.out <filePath> );
+	} else {
+
+		string arg1 = args[1];
+		string arg2 = args[2];
+
+		printf("Argument 1 : %s , Argument 2 : %s \n", args[0], args[1]);
+		
+		FILE* genomeFile = fopen(arg1, 'r' );
+		//TODO: check file 		
+
+
+		fclose (genomeFile);
+
+	}
+
+}